Database
This web based instance of METATRYP has 194 proteomes ingested. The proteomes were selected for the METATRYP Coronavirus database based on their relevance to coronavirus, target hosts & model systems, oral microbiome microbes and availability of proteome data. These proteomes are likely not exhaustive nor automatically updated (last updated 11/22/2020). All proteome additions are considered on a case-by-case basis.
Proteomes
| Name | NCBI ID |
|---|---|
| Abiotrophia defectiva | 46125 |
| Alphacoronavirus | 693996 |
| Bat coronavirus Cp/Yunnan2011 | 1283333 |
| Bat coronavirus RaTG13 | 2709072 |
| Bat coronavirus Rp/Shaanxi2011 | 1283332 |
| Bat SARS coronavirus HKU3 | 442736 |
| Bat SARS coronavirus Rp1 | 349342 |
| Bat SARS coronavirus Rp2 | 349343 |
| Bat SARS CoV Rm1/2004 | 347536 |
| Bat SARS CoV Rp3/2004 | 349344 |
| Bat SARS-like coronavirus | 1508227 |
| Bat SARS-like coronavirus RsSHC014 | 1415851 |
| Bat SARS-like coronavirus WIV1 | 1415852 |
| Bat SARS-like coronavirus YNLF_31C | 1699360 |
| Bat SARS-like coronavirus YNLF_34C | 1699361 |
| Betacoronavirus | 694002 |
| Bovine coronavirus | 11128 |
| BtRf-BetaCoV/HeB2013 | 1503296 |
| BtRf-BetaCoV/JL2012 | 1503299 |
| BtRf-BetaCoV/SX2013 | 1503300 |
| BtRs-BetaCoV/GX2013 | 1503301 |
| BtRs-BetaCoV/HuB2013 | 1503302 |
| BtRs-BetaCoV/YN2013 | 1503303 |
| Chlorocebus sabaeus | 60711 |
| Civet SARS CoV 007/2004 | 285945 |
| Coronaviridae | 11118 |
| Corynebacterium matruchotii | 43768 |
| cRAPome Aequorea victoria (Jellyfish) | 6099 |
| cRAPome Bos taurus (domestic cow) | 9913 |
| cRAPome E. coli (ECOLI) | 562 |
| cRAPome E. coli (ECOLX) | 562 |
| cRAPome Equus caballus (horse) | 9796 |
| cRAPome Gallus gallus (chicken) | 9031 |
| cRAPome Grifola frondosa (maitake fungus) | 5627 |
| cRAPome Hevea brasiliensis?(Para rubber tree) | 3981 |
| cRAPome Homo sapiens | 9606 |
| cRAPome Lysobacter enzymogenes | 69 |
| cRAPome Oryctolagus?cuniculus (rabbit) | 9986 |
| cRAPome Ovis aries (sheep) | 9940 |
| cRAPome Saccharomyces cerevisiae (Baker's yeast) | 4932 |
| cRAPome Saccharomyces cerevisiae virus L-A | 11008 |
| cRAPome Staphylococcus?aureus | 1280 |
| cRAPome Sus scrofa (pig) | 9823 |
| Deltacoronavirus | 1159901 |
| Equine arteritis virus | 11047 |
| Equine torovirus | 329862 |
| Gammacoronavirus | 694013 |
| H7N9 subtype | 333278 |
| Homo sapiens | 9606 |
| Human coronavirus 229E | 11137 |
| Human coronavirus 229E | 11137 |
| Human coronavirus HKU1 | 290028 |
| Human coronavirus NL63 | 277944 |
| Human coronavirus NL63 | 277944 |
| Human torovirus | 67605 |
| Influenza A - H1N1 subtype | 114727 |
| Influenza A - H3N2 subtype | 119210 |
| Influenza A - H5N1 subtype | 102793 |
| Influenza C virus | 11552 |
| Influenza D virus | 1511084 |
| Influenza virus type B | 11520 |
| Lactate dehydrogenase-elevating virus | 11048 |
| Lactobacillus acidophilus | 1579 |
| Lactobacillus casei | 1582 |
| Lactobacillus johnsonii | 33959 |
| Lactobacillus reuteri | 1598 |
| Lactobacillus rhamnosus | 47715 |
| Middle East respiratory syndrome-related coronavirus | 1335626 |
| Murine coronavirus | 694005 |
| Pedacovirus | 2509505 |
| Pipistrellus bat coronavirus HKU5 | 694008 |
| Porcine epidemic diarrhea virus | 28295 |
| Porcine epidemic diarrhea virus | 28295 |
| Porcine reproductive and respiratory syndrome virus 1 (PRRSV1) | 1965066 |
| Porcine reproductive and respiratory syndrome virus (PRRSV) | 28344 |
| Porcine torovirus | 237020 |
| Porcine transmissable gastroenteritis coronavirus | 11149 |
| Porcine transmissable gastroenteritis coronavirus | 11149 |
| Prevotella melaninogenica | 28132 |
| Pseudomonas aeruginosa PAO1 | 208964 |
| recombinant SARSr-CoV | 698398 |
| Rhinolophus affinis coronavirus | 1487703 |
| Rothia mucilaginosa (strain DY-18) (Stomatococcus mucilaginosus) | 680646 |
| Rousettus bat coronavirus HKU9 | 694006 |
| SARS bat coronavirus | 1431340 |
| SARS coronavirus A001 | 305401 |
| SARS coronavirus A013 | 305402 |
| SARS coronavirus A021 | 305403 |
| SARS coronavirus A030 | 305404 |
| SARS coronavirus A031 | 305405 |
| SARS coronavirus AS | 248485 |
| SARS coronavirus B012 | 305406 |
| SARS coronavirus B024 | 305407 |
| SARS coronavirus B029 | 305408 |
| SARS coronavirus B033 | 305409 |
| SARS coronavirus B039 | 299335 |
| SARS coronavirus B040 | 305410 |
| SARS coronavirus BJ01 | 228407 |
| SARS coronavirus BJ162 | 321147 |
| SARS coronavirus BJ182-12 | 511429 |
| SARS coronavirus BJ182-4 | 511430 |
| SARS coronavirus BJ182-8 | 511431 |
| SARS coronavirus BJ182a | 511432 |
| SARS coronavirus BJ182b | 511433 |
| SARS coronavirus BJ202 | 321149 |
| SARS coronavirus BJ302 | 252654 |
| SARS coronavirus C014 | 305412 |
| SARS coronavirus C017 | 305413 |
| SARS coronavirus C018 | 305414 |
| SARS coronavirus C019 | 305415 |
| SARS coronavirus C025 | 305416 |
| SARS coronavirus C028 | 305417 |
| SARS coronavirus C029 | 305418 |
| SARS Coronavirus CDC#200301157 | 292360 |
| SARS coronavirus civet010 | 285946 |
| SARS coronavirus civet014 | 285947 |
| SARS coronavirus civet019 | 285948 |
| SARS coronavirus CS21 | 385683 |
| SARS coronavirus CS24 | 385684 |
| SARS coronavirus CUHK-AG01 | 239241 |
| SARS coronavirus CUHK-AG02 | 239242 |
| SARS coronavirus CUHK-AG03 | 239243 |
| SARS coronavirus CUHK-L2 | 260550 |
| SARS coronavirus CUHK-Su10 | 229206 |
| SARS coronavirus CUHK-W1 | 228415 |
| SARS coronavirus cw037 | 265124 |
| SARS coronavirus cw049 | 264989 |
| SARS coronavirus ES191 | 385685 |
| SARS coronavirus ES260 | 385686 |
| SARS coronavirus FRA | 242743 |
| SARS coronavirus Frankfurt 1 | 229992 |
| SARS coronavirus GD01 | 233044 |
| SARS coronavirus GD03T0013 | 262338 |
| SARS coronavirus GD322 | 291613 |
| SARS coronavirus GZ02 | 256753 |
| SARS coronavirus GZ0403 | 293321 |
| SARS coronavirus HB | 253634 |
| SARS coronavirus HHS-2004 | 285267 |
| SARS coronavirus HKU-39849 | 228404 |
| SARS coronavirus Hong Kong/03/2003 | 227998 |
| SARS coronavirus HSR 1 | 235088 |
| SARS coronavirus NS-1 | 260743 |
| SARS coronavirus P2 | 627442 |
| SARS coronavirus PC4-115 | 296837 |
| SARS coronavirus PC4-137 | 296838 |
| SARS coronavirus PC4-145 | 296839 |
| SARS coronavirus PC4-199 | 296840 |
| SARS coronavirus PC4-205 | 293320 |
| SARS coronavirus PC4-241 | 296841 |
| SARS coronavirus PUMC01 | 253433 |
| SARS coronavirus PUMC02 | 253434 |
| SARS coronavirus PUMC03 | 253435 |
| SARS coronavirus Rs_672/2006 | 722424 |
| SARS coronavirus sf098 | 264990 |
| SARS coronavirus sf099 | 264988 |
| SARS coronavirus ShanghaiQXC1 | 258507 |
| SARS coronavirus ShanghaiQXC2 | 258508 |
| SARS coronavirus Shanhgai LY | 235173 |
| SARS coronavirus Sin2774 | 235410 |
| SARS coronavirus Sino3-11 | 255729 |
| SARS coronavirus Taiwan | 227861 |
| SARS coronavirus Taiwan JC-2003 | 230522 |
| SARS coronavirus Taiwan TC1 | 237639 |
| SARS coronavirus Taiwan TC2 | 237640 |
| SARS coronavirus TJ01 | 421444 |
| SARS coronavirus TJF | 284672 |
| SARS coronavirus Tor2 | 227984 |
| SARS coronavirus TW1 | 229993 |
| SARS coronavirus TW10 | 258963 |
| SARS coronavirus TW11 | 258964 |
| SARS coronavirus TW3 | 258966 |
| SARS coronavirus TW4 | 258967 |
| SARS coronavirus TW6 | 258969 |
| SARS coronavirus TW7 | 258970 |
| SARS coronavirus TW8 | 258971 |
| SARS coronavirus TW9 | 258972 |
| SARS coronavirus TWH | 240549 |
| SARS coronavirus TWJ | 240550 |
| SARS coronavirus TWK | 240551 |
| SARS coronavirus TWS | 240552 |
| SARS coronavirus TWY | 240553 |
| SARS coronavirus Vietnam | 227860 |
| SARS coronavirus WF188 | 385687 |
| SARS coronavirus WH20 | 312027 |
| SARS coronavirus xw002 | 265125 |
| SARS coronavirus ZJ01 | 230471 |
| SARS-related betacoronavirus Rp3/2004 | 2042698 |
| Schaalia odontolytica | 1660 |
| Selenomonas sputigena | 69823 |
| Severe acute respiratory syndrome coronavirus 2 | 2697049 |
| Simian hemorrhagic fever virus | 38143 |
| Streptococcus salivarius | 1304 |
| Tylonycteris bat coronavirus HKU4 | 694007 |
| Unclassified Orthocoronavirinae | 2730119 |